Cluster Optimized Proximity Scaling

Rusch, Thomas ORCID: https://orcid.org/0000-0002-7773-2096 and Mair, Patrick and Hornik, Kurt ORCID: https://orcid.org/0000-0003-4198-9911 (2021) Cluster Optimized Proximity Scaling. Journal of Computational and Graphical Statistics. ISSN 1537-2715

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Abstract

Proximity scaling methods such as Multidimensional Scaling (MDS) represent objects in a low dimensional configuration so that fitted object distances optimally approximate object proximities. Besides finding the optimal configuration, an additional goal may be to make statements about the cluster arrangement of objects. This fails if the configuration lacks appreciable clusteredness. We present Cluster Optimized Proximity Scaling (COPS), which attempts to find a configuration that exhibits clusteredness. In COPS, a flexible parametrized scaling loss function that may emphasize differentiation information in the proximities is augmented with an index (OPTICS Cordillera) that penalizes lack of clusteredness of the configuration. We present two variants of this, one for finding a configuration directly and one for hyperparameter selection for parametric stresses. We apply both to a functional magnetic resonance imaging (fMRI) data set on neural representations of mental states in a social cognition task and show that COPS improves clusteredness of the configuration, enabling visual identification of clusters of mental states. Online supplementary material is available including an R package and a document with additional details.

Item Type: Article
Keywords: clusteredness, data visualization, exploratory data analysis, multidimensional scaling, nonlinear dimension reduction, social cognition
Divisions: Kompetenzzentren > Empirische Forschungsmethoden
Version of the Document: Accepted for Publication
Depositing User: Gertraud Novotny
Date Deposited: 16 Feb 2021 13:47
Last Modified: 16 Feb 2021 13:47
Related URLs:
FIDES Link: https://bach.wu.ac.at/d/research/results/98556/
URI: https://epub.wu.ac.at/id/eprint/8001

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